MIGRATE-N
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Speed of test data sets using the parallel migrate version. the DNA dataset has 36 loci (this should lead in principle to a fastest run with 37 nodes, the other dataset have 2 to 10 loci. Download the TESTSUITE and add your
fast cluster/Desktop to the list by sending me results (follow the README in the TESTSUITE)
Nodes
Version
CPUs
Cores
DNA
[s]
msat [s]
iam
[s]
hap
[s]
Comments
3
3.2.12
1
2
309
?
38
429
Macbook Pro 17”: Core 2 Duo 2.16 GHz, MacOS 10.6.7 [PB 2011-05-26]
Notes: Time is in seconds wall clock time and not cpu or core time. The rows are ordered from the fastest (top to the slowest for Bayes and for ML independently. Blue is a single CPU compile for reference. The differences between ML and Bayesian inference do not mean anything because the run-lengths are quite different in their parmfiles and do not try to match.
Nodes
Version
CPUs
Cores
DNA
msat
iam
hap
Comments
3
3.2.12
1
2
409
?
24
631
Macbook Pro 17”, 2.16 GHz, MacOS 10.6.7 [Peter Beerli 2011-05-26]
Maximum likelihood run
Bayesian inference runs
11
3.2.13
11
*1
63
403
81
350
Linux cluster: CentOS 2.6.18-53.1 AMD 246, 2 GHz [PB 2011-06-06]
11
3.2.13
11
*1
102
77
16
537
Linux cluster: CentOS 2.6.18-53.1 AMD 246, 2 GHz [PB 2011-06-06]
* cluster computer have most often more than one core per cpu, but each program node is considered independent and equivalent to a single core.
11
3.2.13
11
*1
51
155
26
214
Linux cluster: CentOS 2.6.18-194.11 AMD 2387, 2.8 GHz [PB 2011-06-06]
11
3.2.13
11
*1
84
47
11
316
Linux cluster: CentOS 2.6.18-194.11 AMD 2387, 2.8 GHz [PB 2011-06-06]
1
3.2.13
1
*1
992
1775
178
1775
Linux cluster: CentOS 2.6.18-53.1 AMD 246, 2 GHz [PB 2011-06-06]
1
3.2.13
1
*1
1283
401
64
1929
Linux cluster: CentOS 2.6.18-53.1 AMD 246, 2 GHz [PB 2011-06-06]
4
3.2.15
1
4
93
170
22
163
iMac: i7 2.8 GHz, MacOS 10.6.7 8GB RAM [AGS 2011-06-20]
4
3.2.15
1
4
104
52
10
254
iMac: i7 2.8 GHz, MacOS 10.6.7 8GB RAM [AGS 2011-06-20]
36
3.2.16
36
*1
24
64
14
49
Linux cluster: SuSE 11SP1 2.6.32.12 Xeon X5670 2.9GHz [OJ 2011-08-09]
36
3.2.14
36
*1
36
15
8
93
Linux cluster: Red Hat 4.1.2-50 AMD 8431, 2.4 GHz [RK 2011-06-21]
36
3.2.14
36
*1
15
71
21
58
Linux cluster: Red Hat 4.1.2-50 AMD 8431, 2.4 GHz [RK 2011-06-21]
36
3.2.16
36
*1
38
14
6
95
Linux cluster: SuSE 11SP1 2.6.32.12 Xeon X5670 2.9GHz [OJ 2011-08-09]
37
3.2.19
37
*1
20
63
24
63
Linux cluster: RedHat 6.x, AMD Bulldozer [PB 2012-05-17]